Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs5013707 chr4:1313777 C/A 4.67E-7 119 41.77 47.97 19.23 KM Plot
THYM rs5018647 chr4:6292799 A/C 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs5018648 chr4:6292818 C/G 1.25E-6 119 50.13 38.58 25.83 KM Plot
THYM rs5019044 chr15:78796282 T/A 3.93E-5 116 42.73 46.6 27.22 KM Plot
THYM rs547742 chr1:58693042 C/T 9.93E-5 119 22.62 51.33 40.67 KM Plot
THYM rs548877 chr11:118300240 C/T 5.26E-5 119 15.72 53.27 41.22 KM Plot
THYM rs55646856 chr4:70074057 C/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs55714238 chr9:97189039 CATTTT/C 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs55727361 chr19:29300415 A/T 7.52E-6 116 46.6 36.67 22.9 KM Plot
THYM rs55746866 chr2:30704331 A/AG 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs55760293 chr4:12541193 C/G 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs55789733 chr2:30815931 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs55803311 chr10:90753135 G/A 2.05E-12 114 41.22 38.13 6 KM Plot
THYM rs55803500 chr8:39930504 C/G 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs55822577 chr6:163069710 G/A 0.000281 118 46.23 27.33 25.4 KM Plot